Publications
To view Mark Beilstein on Google Scholar, click here.
Divergence-based Introgression Polarization. 2020. Forsythe, E.S., Sloan, D.B. & M.A. Beilstein. Genome Biology and Evolution 12: 463-478 10.1093/gbe/evaa053. - LINK
Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex. 2020 Dew-Budd, K., Cheung, J., Palos, K., Forsythe, E. S., & Beilstein, M. A., PloS one doi: 10.1371/journal.pone.0222687. - LINK
Duplication and functional divergence of a calcium sensor in the Brassicaceae. 2020. Monihan, S.M. Magness, C.A., Ryu, C-H., McMahon, M.M., Beilstein, M.A. & Karen S Schumaker. Journal of Experimental Botany 9:2782–2795, doi: 10.1093/jxb/eraa031 - LINK
N6 -Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis. 2018. Anderson, S. J., Kramer, M. C., Gosai, S. J., Yu, X., Vandivier, L. E., Nelson, A. D. L., Anderson, Z. D., Beilstein, M. A., Fray, R. G., Lyons, E., Gregory, B. D. Cell Reports doi: 10.1016/j.celrep.2018.10.020 - PDF
A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B). 2018. Francois-Moutal, L., Jahanbakhsh, S., Nelson, A. D. L., et al. ACS Chemical Biology. doi: 10.1021/acschembio.8b00745 - LINK
Evidence for a Unique DNA-Dependent RNA Polymerase in Cereal Crops. 2018. Trujillo, J. T., Seetharam, A. S., Hufford, M. B., Beilstein, M. A., Mosher, R. A. Molecular Biology and Evolution. doi:10.1093/molbev/msy146 - LINK
Phylogenetics of Camelina Crantz. (Brassicaceae) and insights on the origin of gold-of-pleasure (Camelina sativa). 2018. Brock, J. R., Donmez, À. A., Beilstein, M. A., Olsen, K. M. Molecular Phylogenetics and Evolution. doi: 10.10.16/j.ympev. 2018.06.031 - LINK
Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs. 2017. Nelson, A. D. L., Devisetty, U. K., Palos, K., Haug-Baltzell, A.K., Lyons, E and M. A. Beilstein. Frontiers in Genetics. doi.org/10.3389/fgene.2017.00052 - PDF
Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism. 2016. Liu, Z., Traveres, R., *Forsythe, E. S., André, F., Lugan, R., Jonasson, G., Boutet-Mercey, S., Tohge, T., Beilstein, M. A., Werck-Reichhart, D., and H. Renault. Nature Communications. doi: 10.1038/ncomms13026 - PDF
Evolution of Arabidopsis Protection of Telomeres 1 alters nucleic acid recognition and telomerase regulation. 2016. Arora, A., Beilstein, M.A., and D. E. Shippen. Nucleic Acids Research. doi: 10.1093/nar/gkw807 - PDF
The Argonaute-binding platform of NRPE1 evolves through modulation of intrinsically disordered repeats. 2016. Trujillo, J. T., Beilstein, M. A., and R. A. Mosher. New Phytologist. doi: 10.1111/nph.14089 - PDF
A genomic analysis of factors driving lincRNA diversification: lessons from plants. 2016. Nelson, A. D. L., Forsythe, E. S., Devisetty, U. K., Clausen, D. S., Haug-Batzell, A. K., Meldrum, A. M. R., Frank, M. R., Lyons, E., and M. A. Beilstein. G3. doi: 10.1534/g3.116.030338 - PDF
Ancient Origin and Recent Innovations of RNA Polymerase IV and V. 2015. Huang, Y., Kendall, T., Forsythe, E. S., Dorantes-Acosta, A., Li, S., Caballero-Pérez, J., Chen, X., Arteaga-Vázquez M., Beilstein, M. A., and R. Mosher. Molecular Biology and Evolution. doi:10.1093/molbev/msv060 - PDF
Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus. 2015. Gosai, S. J., Foley, S. W., Wang, D., Silverman, I. M., Selamoglu, N., Nelson, A. D.L., Beilstein, M. A., Daldal, F., Deal, and B. D. Gregory. Molecular Cell. 57:376-388. - PDF
Evolution of the telomere-associated protein POT1a in Arabidopsis thaliana is characterized by positive selection to reinforce protein-protein interaction. 2015. Beilstein, M. A., Renfrew, K. B., Song X., Shakirov E .V., Zanis M. J. and D. E. Shippen. Molecular Biology and Evolution. doi:10.1093/molbev/msv025 - PDF
Distinct roles for SOS1 in the convergent evolution of salt tolerance in Eutrema salsugineum and Schrenkiella parvula. 2014. Jarvis, D. E., Ryu, C-H., Beilstein, M.A., and K.S. Schumaker. Molecular Biology and Evolution. doi: 10.1093/molbev/msu152 - PDF
Extending the model of Arabidopsis telomere length and composition across Brassicaceae. 2014. Nelson, A. D. L., Forsythe, E. S., Gan, X., Tsiantis, M., and M. A. Beilstein. Chromosome Research. doi: 10.1007/s10577-014-9423-y. - PDF
Diversification times among Brassica crops suggest hybrid formation after twenty million years of divergence. 2014. Arias, T., Beilstein, M. A., Tang, M., McKain, M. R., and J. C. Pires. American Journal of Botany. 101: 86-91 - PDF
The reference genome of the halophytic plant Eutrema salsugineum. 2013. Yang, R., Jarvis, D.E., Chen, H., Beilstein, M.A., Grimwood, J., Jenkins, J., Shu, S., Prochnik, S., Xin, M., Ma, C., Schmutz, J., Wing, R.A., Mitchell-Olds, T., Schumaker, K.S., Wang, X. Frontiers in Plant Genetics and Genomics doi: 10.3389/fpls.2013.00046. - PDF
Evolution of the Arabidopsis telomerase RNA. 2012. Beilstein, M.A., Brinegar, A. E., and D. E. Shippen. Frontiers in Genetics 3:188. doi:10.3389/fgene.2012.00188. - PDF
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis. 2010. Beilstein, M. A., Nagalingum, N., Clements, M. D., Manchester, S. R., and S. Mathews. Proceedings of the National Academy of Sciences, U.S.A. 107(43): 18724-18728. *[Featured “In This Issue” in PNAS 25 October, 2010; “Research Highlights This Week” in Nature October 14, 2010; Reviewed for Faculty of 1000 by Dr. Deborah Charlesworth]. - PDF
Polyploid genome of Camelina sativa revealed by isolation of fatty-acid synthesis genes. 2010. Hutcheon C., Ditt, R. F., Beilstein, M. A., Comai, L., Schroeder, J., Goldstein, E., Shewmaker, C. K., Nguyen, T., DeRocher, J., and J. Kiser. BMC Plant Biology - PDF
Evolution of CST function in telomere maintenance. 2010. Price, C. M., K. A. Boltz, M. X. Chaiken, J. A. Stewart, M. A. Beilstein, and D. E. Shippen. Cell Cycle 9(16): 3157-3165. - PDF
A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants. 2010. Mathews, S., Clements, M. D., and M. A. Beilstein. Philosophical Transactions of the Royal Society B 365: 383–395. - PDF
Camelineae (Brassicaceae). 2010. Beilstein, M. A. and I. A. Al-Shehbaz. Flora of North America Volume 7, 451-453.
Brassicaceae phylogeny inferred from phytochrome A and ndhF data: tribes and trichomes revisited. 2008. Beilstein, M. A., Al-Shehbaz, I. A., Mathews, S., and E. A. Kellogg. American Journal of Botany 95: 1307-1327. - PDF
Brassicaceae phylogeny and trichome evolution. 2006. Beilstein, M. A., I. A. Al-Shehbaz, and E. A. Kellogg. American Journal of Botany 93: 607-619. *[Reviewed for Faculty of 1000 in both Plant Growth/Development (Liam Dolan) and Plant Evolution (Thomas Mitchell-Olds), #7 of “Top 10 most viewed citations” May 2006]. - PDF
Systematics and phylogeny of the Brassicaceae: an overview. 2006. Al-Shehbaz, I. A., Beilstein, M. A., and E. A. Kellogg. Plant Systematics and Evolution 259: 89-120. - PDF
Pennellia brachycarpa (Brassicaceae), a new species from Jujuy, Argentina. 2005. Beilstein, M. A. and I. A. Al-Shehbaz. Novon 15: 267–269. - PDF
Cytoskeletal requirements during Arabidopsis trichome development. 2004. Beilstein, M. A. and D. Szymanski. The Plant Cytoskeleton in Cell Differentiation and Development (P. Hussey, ed.). Blackwell, Oxford, U.K. - Book
A phylogenetic analysis of Western North American Draba (Brassicaceae) based on nuclear ribosomal DNA sequences from the ITS region. 2003. Beilstein, M. A. and M.D. Windham. Systematic Botany 28: 584–592. - PDF
Divergence-based Introgression Polarization. 2020. Forsythe, E.S., Sloan, D.B. & M.A. Beilstein. Genome Biology and Evolution 12: 463-478 10.1093/gbe/evaa053. - LINK
Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex. 2020 Dew-Budd, K., Cheung, J., Palos, K., Forsythe, E. S., & Beilstein, M. A., PloS one doi: 10.1371/journal.pone.0222687. - LINK
Duplication and functional divergence of a calcium sensor in the Brassicaceae. 2020. Monihan, S.M. Magness, C.A., Ryu, C-H., McMahon, M.M., Beilstein, M.A. & Karen S Schumaker. Journal of Experimental Botany 9:2782–2795, doi: 10.1093/jxb/eraa031 - LINK
N6 -Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis. 2018. Anderson, S. J., Kramer, M. C., Gosai, S. J., Yu, X., Vandivier, L. E., Nelson, A. D. L., Anderson, Z. D., Beilstein, M. A., Fray, R. G., Lyons, E., Gregory, B. D. Cell Reports doi: 10.1016/j.celrep.2018.10.020 - PDF
A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B). 2018. Francois-Moutal, L., Jahanbakhsh, S., Nelson, A. D. L., et al. ACS Chemical Biology. doi: 10.1021/acschembio.8b00745 - LINK
Evidence for a Unique DNA-Dependent RNA Polymerase in Cereal Crops. 2018. Trujillo, J. T., Seetharam, A. S., Hufford, M. B., Beilstein, M. A., Mosher, R. A. Molecular Biology and Evolution. doi:10.1093/molbev/msy146 - LINK
Phylogenetics of Camelina Crantz. (Brassicaceae) and insights on the origin of gold-of-pleasure (Camelina sativa). 2018. Brock, J. R., Donmez, À. A., Beilstein, M. A., Olsen, K. M. Molecular Phylogenetics and Evolution. doi: 10.10.16/j.ympev. 2018.06.031 - LINK
Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs. 2017. Nelson, A. D. L., Devisetty, U. K., Palos, K., Haug-Baltzell, A.K., Lyons, E and M. A. Beilstein. Frontiers in Genetics. doi.org/10.3389/fgene.2017.00052 - PDF
Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism. 2016. Liu, Z., Traveres, R., *Forsythe, E. S., André, F., Lugan, R., Jonasson, G., Boutet-Mercey, S., Tohge, T., Beilstein, M. A., Werck-Reichhart, D., and H. Renault. Nature Communications. doi: 10.1038/ncomms13026 - PDF
Evolution of Arabidopsis Protection of Telomeres 1 alters nucleic acid recognition and telomerase regulation. 2016. Arora, A., Beilstein, M.A., and D. E. Shippen. Nucleic Acids Research. doi: 10.1093/nar/gkw807 - PDF
The Argonaute-binding platform of NRPE1 evolves through modulation of intrinsically disordered repeats. 2016. Trujillo, J. T., Beilstein, M. A., and R. A. Mosher. New Phytologist. doi: 10.1111/nph.14089 - PDF
A genomic analysis of factors driving lincRNA diversification: lessons from plants. 2016. Nelson, A. D. L., Forsythe, E. S., Devisetty, U. K., Clausen, D. S., Haug-Batzell, A. K., Meldrum, A. M. R., Frank, M. R., Lyons, E., and M. A. Beilstein. G3. doi: 10.1534/g3.116.030338 - PDF
Ancient Origin and Recent Innovations of RNA Polymerase IV and V. 2015. Huang, Y., Kendall, T., Forsythe, E. S., Dorantes-Acosta, A., Li, S., Caballero-Pérez, J., Chen, X., Arteaga-Vázquez M., Beilstein, M. A., and R. Mosher. Molecular Biology and Evolution. doi:10.1093/molbev/msv060 - PDF
Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus. 2015. Gosai, S. J., Foley, S. W., Wang, D., Silverman, I. M., Selamoglu, N., Nelson, A. D.L., Beilstein, M. A., Daldal, F., Deal, and B. D. Gregory. Molecular Cell. 57:376-388. - PDF
Evolution of the telomere-associated protein POT1a in Arabidopsis thaliana is characterized by positive selection to reinforce protein-protein interaction. 2015. Beilstein, M. A., Renfrew, K. B., Song X., Shakirov E .V., Zanis M. J. and D. E. Shippen. Molecular Biology and Evolution. doi:10.1093/molbev/msv025 - PDF
Distinct roles for SOS1 in the convergent evolution of salt tolerance in Eutrema salsugineum and Schrenkiella parvula. 2014. Jarvis, D. E., Ryu, C-H., Beilstein, M.A., and K.S. Schumaker. Molecular Biology and Evolution. doi: 10.1093/molbev/msu152 - PDF
Extending the model of Arabidopsis telomere length and composition across Brassicaceae. 2014. Nelson, A. D. L., Forsythe, E. S., Gan, X., Tsiantis, M., and M. A. Beilstein. Chromosome Research. doi: 10.1007/s10577-014-9423-y. - PDF
Diversification times among Brassica crops suggest hybrid formation after twenty million years of divergence. 2014. Arias, T., Beilstein, M. A., Tang, M., McKain, M. R., and J. C. Pires. American Journal of Botany. 101: 86-91 - PDF
The reference genome of the halophytic plant Eutrema salsugineum. 2013. Yang, R., Jarvis, D.E., Chen, H., Beilstein, M.A., Grimwood, J., Jenkins, J., Shu, S., Prochnik, S., Xin, M., Ma, C., Schmutz, J., Wing, R.A., Mitchell-Olds, T., Schumaker, K.S., Wang, X. Frontiers in Plant Genetics and Genomics doi: 10.3389/fpls.2013.00046. - PDF
Evolution of the Arabidopsis telomerase RNA. 2012. Beilstein, M.A., Brinegar, A. E., and D. E. Shippen. Frontiers in Genetics 3:188. doi:10.3389/fgene.2012.00188. - PDF
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis. 2010. Beilstein, M. A., Nagalingum, N., Clements, M. D., Manchester, S. R., and S. Mathews. Proceedings of the National Academy of Sciences, U.S.A. 107(43): 18724-18728. *[Featured “In This Issue” in PNAS 25 October, 2010; “Research Highlights This Week” in Nature October 14, 2010; Reviewed for Faculty of 1000 by Dr. Deborah Charlesworth]. - PDF
Polyploid genome of Camelina sativa revealed by isolation of fatty-acid synthesis genes. 2010. Hutcheon C., Ditt, R. F., Beilstein, M. A., Comai, L., Schroeder, J., Goldstein, E., Shewmaker, C. K., Nguyen, T., DeRocher, J., and J. Kiser. BMC Plant Biology - PDF
Evolution of CST function in telomere maintenance. 2010. Price, C. M., K. A. Boltz, M. X. Chaiken, J. A. Stewart, M. A. Beilstein, and D. E. Shippen. Cell Cycle 9(16): 3157-3165. - PDF
A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants. 2010. Mathews, S., Clements, M. D., and M. A. Beilstein. Philosophical Transactions of the Royal Society B 365: 383–395. - PDF
Camelineae (Brassicaceae). 2010. Beilstein, M. A. and I. A. Al-Shehbaz. Flora of North America Volume 7, 451-453.
Brassicaceae phylogeny inferred from phytochrome A and ndhF data: tribes and trichomes revisited. 2008. Beilstein, M. A., Al-Shehbaz, I. A., Mathews, S., and E. A. Kellogg. American Journal of Botany 95: 1307-1327. - PDF
Brassicaceae phylogeny and trichome evolution. 2006. Beilstein, M. A., I. A. Al-Shehbaz, and E. A. Kellogg. American Journal of Botany 93: 607-619. *[Reviewed for Faculty of 1000 in both Plant Growth/Development (Liam Dolan) and Plant Evolution (Thomas Mitchell-Olds), #7 of “Top 10 most viewed citations” May 2006]. - PDF
Systematics and phylogeny of the Brassicaceae: an overview. 2006. Al-Shehbaz, I. A., Beilstein, M. A., and E. A. Kellogg. Plant Systematics and Evolution 259: 89-120. - PDF
Pennellia brachycarpa (Brassicaceae), a new species from Jujuy, Argentina. 2005. Beilstein, M. A. and I. A. Al-Shehbaz. Novon 15: 267–269. - PDF
Cytoskeletal requirements during Arabidopsis trichome development. 2004. Beilstein, M. A. and D. Szymanski. The Plant Cytoskeleton in Cell Differentiation and Development (P. Hussey, ed.). Blackwell, Oxford, U.K. - Book
A phylogenetic analysis of Western North American Draba (Brassicaceae) based on nuclear ribosomal DNA sequences from the ITS region. 2003. Beilstein, M. A. and M.D. Windham. Systematic Botany 28: 584–592. - PDF
